Get the tips belonging to a part in a tree

PCMTreeGetTipsInPart(tree, part)

Arguments

tree

a phylo object with an edge.regime member or a PCMTree object

part

a character or integer denoting a part name in the tree.

Value

an integer vector with the ids of the tips belonging to part

See also

Examples

set.seed(1, kind = "Mersenne-Twister", normal.kind = "Inversion") tree <- ape::rtree(10) regimes <- sample(letters[1:3], nrow(tree$edge), replace = TRUE) PCMTreeSetRegimesForEdges(tree, regimes) # \donttest{ PCMTreePlot(tree) + ggtree::geom_nodelab() + ggtree::geom_tiplab()
# } part <- PCMTreeGetPartNames(tree)[1] PCMTreeGetTipsInPart(tree, part)
#> integer(0)
print(part)
#> [1] "11"