Phylogenetic heritability estimated at time t
H2(alpha, sigma, sigmae, t = Inf, tm = 0)
| alpha, sigma | numeric, parameters of the OU process acting on the genetic contributions |
|---|---|
| sigmae | numeric, environmental standard deviation |
| t | time from the beginning of the process at which heritability should be calculated, i.e. epidemiologic time |
| tm | average time for within host evolution from getting infected until getting measured or passing on the infection to another host |