Extract information for fast likelihood calculation using the breadth-first pruning algorithm.

Source: R/likPOUMM.R

Extract information for fast likelihood calculation using the breadth-first pruning algorithm.

pruneTree(tree, z, se = 0)

Arguments

tree

a phylo object
z

Numeric vector with length(tree$tip.label) values corresponding to tree$tip.label.
se

Non-negative numerical or N-vector indicating known standard measurement error.

Value

a list of objects used for likelihood evaluation