Estimating intraclass correlation (ICC) through ANOVA
rA(epidemic = NULL, data = NULL, GEValues = NULL, sampledOnly = TRUE, activeOnly = FALSE, tMin = 0, tMax = Inf, firstN = Inf, lastN = Inf, by = list("gene"), report = FALSE, includePop = TRUE)
| epidemic | a list of objects returned from simulateEpidemic |
|---|---|
| data | NULL or a data.table such as the element gen in an epidemic list |
| GEValues | genotype-environment trait values for calculating the z-values; if NULL it is assumed that the z-values are already in data, or epidemic$gen. |
| sampledOnly, activeOnly, tMin, tMax, firstN, lastN | parameters passed to extractPop |
| by | a character string which can be evaluated as expression in the by clause of data.table the times of sampling for the individuals; otherwise, this would be the times of infection. |
| report | a logical indicating what result should be returned. If FALSE, only the ICC value is returned, otherwise a list of statistics from the ANOVA calculation |
See report parameter