Scatter plot of phylogenetic pairs
scatterPlotPPs(z, tree, ppAnalysis, CPPthr = 10^-4, ruleOutXIQR = 1.5, zName = "z", treeName = "tree", xlab = expression(lg(tau) ~ "[lg(subst. per site)]"), ylab = expression(group("|", Delta ~ lg(spVL), "|")), xlim = c(-6, 0), ylim = c(0, 5))
| z | numeric vector of phenotypes |
|---|---|
| tree | a phylo object with tip-labels corresponding to the entries in z |
| ppAnalysis | a list resulting from a call to analyseCPPs on the same tree and z. |
| CPPthr | numeric indicating the maximum phylogenetic distance separating a closest phylogenetic pair |
| ruleOutXIQR | numeric a multiplier used to define outlier CPPs as defined in the referenced article. |
| zName, treeName | characters used when the parameter z is a list; indicate the corresponding names in the list |
| xlim, ylim, xlab, ylab | graphical parameters passed to plot |