PCMBase
An R-package for fast likelihood calculation and simulation of phylogenetic comparative models
Updated 7 Dec 2019 by venelin
PCMBaseCpp
An R-package with Rcpp-modules for fast likelihood calculation of Gaussian phylogenetic models
Updated 7 Dec 2019 by venelin
POUMM
An R-package implementing the univariate Phylogenetic Ornstein-Uhlenbeck Mixed Model
Updated 7 Dec 2019 by venelin
SPLITT
A one-header C++ template library for Serial and Parallel LIneage Traversal of Trees
Updated 7 Dec 2019 by venelin
PCMBayes
An R-package for Bayesian inference of multivariate Gaussian phylogenetic models with shifts
Updated 12 Nov 2019 by venelin
ThreePointUsingSPLITT
Parallel implementation of the three point structure algorithm for calculating quadratic forms and inverted matrices
Updated 7 Nov 2019 by venelin
BinaryPoissonUsingSPLITT
Updated 7 Nov 2019 by venelin
PMMUsingSPLITT
An example R-package using the SPLITT library to calculate the likelihood of a phylogenetic mixed model (PMM).
Updated 7 Nov 2019 by venelin
PCMView
Advanced Visualization of Phylogenetic Comparative Models
Updated 23 Oct 2019 by venelin
PCMFit
An R-package for maximum likelihood inference of Gaussian phylogenetic models with shifts
Updated 6 Sep 2019 by venelin
patherit
Pathogen Trait Heritability
Updated 18 Feb 2018 by venelin
toyepidemic
An R package for simulating within-host and between-host dynamics during epidemics
Updated 6 Jan 2018 by venelin