All functions
calcValue	calculate phenotypic values
decomposeTrait	Decompose trait values according to the model z=G+I+E+epsilon
decomposeVar	Variance decomposition of trait values
extractDRCouples	Extract donor-recipient couples from an epidemic
extractPop	Extract a sub-population of individuals involved in an epidemic
extractTree	Extract the transmission tree connecting sampled individuals in a simulated epidemic
generateGenotypes	Possible genotypes based on numbers of alleles at QTLs.
generateRateTransTemplate	Generate a state transition template matrix based on numbers of alleles at QTLs.
newgennxNorm	simulating evolution on continuous time scale sde : numeric or vector of standard deviations of the environmental effects for each allele N : number of individuals nGtps : number of alleles sde : a numeric or a numeric matrix, sde[env, g]: standard dev of the special env. effect for <env, g>
normReactPlot	norm-reaction plot
simulateEpidemic	Simulate within and between host dynamics in an epidemic